10-Q
Table of Contents

 
 
UNITED STATES
SECURITIES AND EXCHANGE COMMISSION
Washington, D.C. 20549
FORM 10-Q
(Mark One)
     
þ   QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934
For the quarter ended March 31, 2009
or
     
o   TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934
For the transition period from            to
Commission File Number: 000-13347
NEUROLOGIX, INC.
(Exact name of Registrant as specified in its charter)
     
Delaware   06-1582875
 
(State or other jurisdiction
of incorporation or organization)
  (I.R.S. Employer Identification No.)
One Bridge Plaza, Fort Lee, NJ 07024
 
(Address of principal executive offices)
(201) 592-6451
 
(Registrant’s telephone number, including area code)
          Indicate by check mark whether the Registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the Registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days. Yes þ No o
          Indicate by check mark whether the Registrant has submitted electronically and posted on its corporate Web site, if any, every Interactive Data File required to be submitted and posted pursuant to Rule 405 of Regulation S-T (§ 232.405 of this chapter) during the preceding 12 months (or for such shorter period that the Registrant was required to submit and post such files). Yes þ No o
          Indicate by check mark whether the Registrant is a large accelerated filer, an accelerated filer, a non-accelerated filer, or a smaller reporting company. See definition of “large accelerated filer,” “accelerated filer” and “smaller reporting company” in Rule 12b-2 of the Exchange Act. (Check one):
             
     Large accelerated filer o   Accelerated filer o   Non-accelerated file o   Smaller reporting company þ
        (Do not check if a smaller reporting company)    
          Indicate by check mark whether the Registrant is a shell company (as defined in Rule 12b-2 of the Exchange Act). Yes o No þ
As of May 1, 2009, 27,764,058 shares of common stock were outstanding.
 
 

 


 

TABLE OF CONTENTS
         
    Page  
PART I. FINANCIAL INFORMATION
       
 
       
Item 1. Financial Statements
       
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 EX-31.1
 EX-31.2
 EX-32.1

 


Table of Contents

NEUROLOGIX, INC. AND SUBSIDIARY
(A Development Stage Company)
CONDENSED BALANCE SHEETS
(Amounts in thousands, except share and per share amounts)
                 
    March 31,   December 31,
    2009   2008
    (Unaudited)        
ASSETS
               
Current assets:
               
Cash and cash equivalents
  $ 16,885     $ 18,906  
Prepaid expenses and other current assets
    301       323  
     
Total current assets
    17,186       19,229  
Equipment, less accumulated depreciation of $562 and $542 at March 31, 2009 and December 31, 2008, respectively
    121       141  
Intangible assets, less accumulated amortization of $200 and $182 at March 31, 2009 and December 31, 2008, respectively
    792       748  
Other assets
    5       5  
     
Total Assets
  $ 18,104     $ 20,123  
     
 
               
LIABILITIES AND STOCKHOLDERS’ EQUITY
               
Current liabilities:
               
Accounts payable and accrued expenses
  $ 826     $ 850  
     
Total current liabilities
    826       850  
 
               
Derivative financial instruments, at estimated fair value — Warrants
    3,859        
     
Total liabilities
    4,685       850  
     
 
               
Commitments and contingencies
               
Stockholders’ equity:
               
Preferred stock; 5,000,000 shares authorized
               
Series A — Convertible, $0.10 par value; 650 shares designated, 645 shares issued and outstanding at March 31, 2009 and December 31, 2008, with an aggregate liquidation preference of $1
           
Series C — Convertible, $0.10 par value; 700,000 shares designated, 285,878 shares issued and outstanding at March 31, 2009 and December 31, 2008, with an aggregate liquidation preference of $6,742 and $5,863 at March 31, 2009 and December 31, 2008, respectively
    29       29  
Series D — Convertible, $0.10 par value; 792,100 shares designated, 734,898 shares issued and outstanding at March 31, 2009 and December 31, 2008, with an aggregate liquidation preference of $28,642 and $27,031 at March 31, 2009 and December 31, 2008, respectively
    73       73  
Common Stock:
               
$0.001 par value; 100,000,000 shares authorized, 27,764,058 issued and outstanding at March 31, 2009 and December 31, 2008
    28       28  
Additional paid-in capital
    56,271       62,393  
Deficit accumulated during the development stage
    (42,982 )     (43,250 )
     
Total stockholders’ equity
    13,419       19,273  
     
Total Liabilities and Stockholders’ Equity
  $ 18,104     $ 20,123  
     
See accompanying notes to condensed financial statements.

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Table of Contents

NEUROLOGIX, INC. AND SUBSIDIARY
(A Development Stage Company)
CONDENSED STATEMENTS OF OPERATIONS
(UNAUDITED)
(Amounts in thousands, except share and per share amounts)
                         
                    For the period
                    February 12, 1999
    Three Months Ended   (inception) through
    March 31,   March 31, 2009
    2009   2008        
     
Revenues
  $     $     $  
Operating expenses:
                       
Research and development
    1,409       1,082       21,026  
General and administrative expenses
    749       922       16,849  
     
Loss from operations
    (2,158 )     (2,004 )     (37,875 )
     
 
                       
Other income (expense):
                       
Dividend, interest and other income
    33       156       1,859  
Interest expense — related parties
                (411 )
Charge for change in estimated fair value of derivative financial instruments — Warrants
    (2,789 )           (2,789 )
     
Other income (expense), net
    (2,756 )     156       (1,341 )
     
Net loss
    (4,914 )     (1,848 )     $(39,216 )
 
                       
 
                       
Preferred stock dividends
    (717 )     (589 )        
             
Net loss applicable to common stock
  $ (5,631 )   $ (2,437 )        
             
 
                       
Net loss applicable to common stock per share, basic and diluted
  $ (0.20 )   $ (0.09 )        
             
 
Weighted average common shares outstanding, basic and diluted
    27,764,058       27,632,808          
             
See accompanying notes to condensed financial statements.

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NEUROLOGIX, INC. AND SUBSIDIARY
(A Development Stage Company)
STATEMENTS OF CHANGES IN STOCKHOLDERS’ EQUITY (DEFICIENCY)
FOR THE PERIOD FROM FEBRUARY 12, 1999 (INCEPTION) THROUGH MARCH 31, 2009
(UNAUDITED)
(Amounts in thousands, except for share and per share amounts)
                                                                                 
                                                                    Deficit    
                                                                    Accumulated    
                                                    Additional           During the    
    Series D Preferred Stock   Series C Preferred Stock   Common Stock   Paid-in   Unearned   Development    
    Shares   Amount   Shares   Amount   Shares   Amount   Capital   Compensation   Stage   Total
     
Sale of common stock to founders
        $ 0           $ 0       6,004,146     $ 0     $ 4     $ 0     $ 0     $ 4  
Net loss
                                                    (328 )     (328 )
Balance, December 31, 1999
        $ 0           $ 0       6,004,146     $ 0     $ 4     $ 0     $ (328 )   $ (324 )
Net loss
                                                    (1,055 )     (1,055 )
Balance, December 31, 2000
        $ 0           $ 0       6,004,146     $ 0     $ 4     $ 0     $ (1,383 )   $ (1,379 )
Stock options granted for services
                                        9                   9  
Common stock issued for intangible assets at $0.09 per share
                            259,491             24                   24  
Net loss
                                                    (870 )     (870 )
Balance, December 31, 2001
        $ 0           $ 0       6,263,637     $ 0     $ 37     $ 0     $ (2,253 )   $ (2,216 )
Retirement of founder shares
                            (33,126 )                              
Common Stock issued pursuant to license agreement at $1.56 per share
                            368,761             577       (577 )            
Private placement of Series B convertible preferred stock
                                        2,613                   2,613  
Amortization of unearned compensation
                                              24             24  
Net loss
                                                    (1,310 )     (1,310 )
Balance, December 31, 2002
        $ 0           $ 0       6,599,272     $ 0     $ 3,227     $ (553 )   $ (3,563 )   $ (889 )
Sale of Common Stock
                            276,054             90       (89 )           1  
Amortization of unearned compensation
                                              164             164  
Net loss
                                                    (2,274 )     (2,274 )
Balance, December 31, 2003
        $ 0           $ 0       6,875,326     $ 0     $ 3,317     $ (478 )   $ (5,837 )   $ (2,998 )
Conversion of note payable to Common Stock at $2.17 per share
                            1,091,321       1       2,371                   2,372  
Conversion of mandatory redeemable preferred stock to Common Stock
                            6,086,991       6       494                   500  
Conversion of Series B convertible preferred stock to Common Stock
                            1,354,746       1       (1 )                  
Effects of reverse acquisition
                            7,103,020       14       5,886                   5,900  
Amortization of unearned compensation
                                              202             202  

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NEUROLOGIX, INC. AND SUBSIDIARY
(A Development Stage Company)
STATEMENTS OF CHANGES IN STOCKHOLDERS’ EQUITY (DEFICIENCY)
FOR THE PERIOD FROM FEBRUARY 12, 1999 (INCEPTION) THROUGH MARCH 31, 2009
(UNAUDITED)
(Amounts in thousands, except for share and per share amounts)
                                                                                 
                                                                    Deficit    
                                                                    Accumulated    
                                                    Additional           During the    
    Series D Preferred Stock   Series C Preferred Stock   Common Stock   Paid-in   Unearned   Development    
    Shares   Amount   Shares   Amount   Shares   Amount   Capital   Compensation   Stage   Total
     
Stock options granted for services
                                        42       (42 )            
Exercise of stock options
                            10,000             15                   15  
Net loss
                                                    (2,937 )     (2,937 )
Balance, December 31, 2004
        $ 0           $ 0       22,521,404     $ 22     $ 12,124     $ (318 )   $ (8,774 )   $ 3,054  
Sale of Common Stock through private placement at an average price of $1.30 per share
                            2,473,914       4       3,062                   3,066  
Sale of Common Stock at an average price of $1.752 per share and warrants to Medtronic
                            1,141,552       1       2,794                   2,795  
Amortization of unearned compensation
                                              825             825  
Stock options granted for services
                                        1,305       (1,305 )            
Exercise of stock options
                            406,054             127                   127  
Net loss
                                                    (5,345 )     (5,345 )
Balance, December 31, 2005
        $ 0           $ 0       26,542,924     $ 27     $ 19,412     $ (798 )   $ (14,119 )   $ 4,522  
Sale of Preferred Stock through private placement at an average price of $35.00 per share
                342,857       34                   11,578                   11,612  
Fair value of beneficial conversion rights issued in connection with issuance of Series C Preferred Stock
                                        2,621                   2,621  
Preferred Dividend and accretion of fair value of beneficial conversion charge
                25,298       3                   (3 )           (2,621 )     (2,621 )
Employee share-based compensation expense
                                        1,193                   1,193  
Non-employee share-based compensation
                                        83                   83  
Reclassification of prior year non-employee compensation to prepaid expenses
                                              487             487  
Effects of adoption of SFAS 123R
                                        (311 )     311              
Net loss
                                                    (7,046 )     (7,046 )
Balance, December 31, 2006
        $ 0       368,155     $ 37       26,542,924     $ 27     $ 34,573     $ 0     $ (23,786 )   $ 10,851  
Sale of Series D Preferred Stock through private placement at an average price of $35.00 per share
    428,571       43                               14,727                   14,770  

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Table of Contents

NEUROLOGIX, INC. AND SUBSIDIARY
(A Development Stage Company)
STATEMENTS OF CHANGES IN STOCKHOLDERS’ EQUITY (DEFICIENCY)
FOR THE PERIOD FROM FEBRUARY 12, 1999 (INCEPTION) THROUGH MARCH 31, 2009
(UNAUDITED)
(Amounts in thousands, except for share and per share amounts)
                                                                                 
                                                                    Deficit    
                                                                    Accumulated    
                                                    Additional           During the    
    Series D Preferred Stock   Series C Preferred Stock   Common Stock   Paid-in   Unearned   Development    
    Shares   Amount   Shares   Amount   Shares   Amount   Capital   Compensation   Stage   Total
     
Fair value of beneficial conversion rights issued in connection with the issuance of Series D Preferred Stock
                                        2,130                   2,130  
Preferred Dividend and accretion of fair value of beneficial conversion charge
    5,108       1       68,801       7                   (8 )           (2,130 )     (2,130 )
Contingent beneficial conversion feature related to Series C Preferred Stock
                                        627             (627 )      
Induced conversion of preferred stock in connection with the issuance of Series D Preferred Stock
    163,470       16       (230,184 )     (23 )                 (347 )           354        
Issuance of Series C Preferred Stock in connection with induced conversion of preferred stock
                93,940       9                   2,949             (2,958 )      
Issuance of Common Stock in connection with issuance of Series D Preferred Stock
                            192,017             192             (192 )      
Employee share-based compensation expense
                                        702                   702  
Non-employee share-based compensation
                                        72                   72  
Conversion of Series C Preferred Stock to Common Stock
                (5,597 )           110,052                                
Exercise of stock options
                            787,815       1       590                   591  
Net loss
                                                    (6,817 )     (6,817 )
Balance, December 31, 2007
    597,149     $ 60       295,115     $ 30       27,632,808     $ 28     $ 56,207     $ 0     $ (36,156 )   $ 20,169  
Sale of Series D Preferred Stock through private placement at an average price of $35.00 per share
    142,857       14                               4,918                   4,932  
Fair value of beneficial conversion rights issued in connection with the issuance of Series D Preferred Stock
                                        562                   562  
Accretion of fair value of beneficial conversion charge
                                                    (562 )     (562 )
Contingent beneficial conversion feature related to Series C Preferred Stock
                                        212             (212 )      
Adjustment to preferred dividends accrued
    (5,108 )     (1 )     (3,237 )     (1 )                 2                    

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NEUROLOGIX, INC. AND SUBSIDIARY
(A Development Stage Company)
STATEMENTS OF CHANGES IN STOCKHOLDERS’ EQUITY (DEFICIENCY)
FOR THE PERIOD FROM FEBRUARY 12, 1999 (INCEPTION) THROUGH MARCH 31, 2009
(UNAUDITED)
(Amounts in thousands, except for share and per share amounts)
                                                                                 
                                                                    Deficit        
                                                                    Accumulated        
                                                    Additional             During the        
    Series D Preferred Stock     Series C Preferred Stock     Common Stock     Paid-in     Unearned     Development        
    Shares     Amount     Shares     Amount     Shares     Amount     Capital     Compensation     Stage     Total  
     
Employee shared-based compensation expense
                                        489                   489  
Non-employee share-based compensation
                                        3                   3  
Conversion of Series C Preferred Stock to Common Stock
                (6,000 )           131,250                                
Net Loss
                                                    (6,320 )     (6,320 )
Balance December 31, 2008
    734,898     $ 73       285,878     $ 29       27,764,058     $ 28     $ 62,393     $     $ (43,250 )   $ 19,273  
 
                                                                               
Employee shared-based compensation expense
                                        73                   73  
Non-employee share-based compensation
                                        57                   57  
Cumulative effect of adoption of EITF No. 07-05
                                        (6,252 )           5,182       (1,070 )
Net Loss
                                                    (4,914 )     (4,914 )
     
Balance March 31, 2009
    734,898     $ 73       285,878     $ 29       27,764,058     $ 28     $ 56,271     $     $ (42,982 )   $ 13,419  
     
See accompanying notes to condensed financial statements.

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NEUROLOGIX, INC. AND SUBSIDIARY
(A Development Stage Company)
CONDENSED STATEMENTS OF CASH FLOWS
(UNAUDITED)
(Amounts in thousands)
                         
                    For the period February
                    12, 1999 (inception)
    Three Months Ended March 31,   through
    2009   2008   March 31, 2009
     
Operating activities:
                       
Net loss
  $ (4,914 )   $ (1,848 )   $ (39,216 )
Adjustments to reconcile net loss to net cash used in operating activities:
                       
Depreciation
    20       29       568  
Amortization
    18       14       340  
Gain on redemption of investment
                (62 )
Stock options granted for services
                9  
Impairment of intangible assets
          29       194  
Amortization of non-employee share-based compensation
    67       13       1,546  
Share-based employee compensation expense
    73       119       2,457  
Non-cash interest expense
                378  
Charge for change in estimated fair value of derivative financial instruments — Warrants
    2,789             2,789  
Changes in operating assets and liabilities
                       
Decrease (increase) in prepaid expenses and other current assets
    12       (12 )     665  
(Decrease) increase in accounts payable and accrued expenses
    (24 )     (480 )     765  
     
Net cash used in operating activities
    (1,959 )     (2,136 )     (29,567 )
     
Investing activities:
                       
Security deposits paid
                (7 )
Purchases of equipment
          (1 )     (575 )
Additions to intangible assets
    (62 )     (46 )     (1,296 )
Proceeds from redemption of investment
                65  
Purchases of marketable securities
                (12,673 )
Proceeds from maturities of marketable securities
                12,673  
     
Net cash used in investing activities
    (62 )     (47 )     (1,813 )
     
Financing activities:
                       
Proceeds from note payable
                1,100  
Borrowings from related party
                2,000  
Cash acquired in Merger
                5,413  
Merger-related costs
                (375 )
Payments of capital lease obligations
                (99 )
Proceeds from exercise of stock options
                733  
Proceeds from issuance of common stock and warrants
                5,066  
Proceeds from issuance of preferred stock
                34,427  
     
Net cash provided by financing activities
                48,265  
     
Net (decrease) increase in cash and cash equivalents
    (2,021 )     (2,183 )     16,885  
Cash and cash equivalents, beginning of period
    18,906       20,157        
     

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NEUROLOGIX, INC. AND SUBSIDIARY
(A Development Stage Company)
CONDENSED STATEMENTS OF CASH FLOWS
(UNAUDITED)
(Amounts in thousands)
                         
                    For the period February
                    12, 1999 (inception)
    Three Months Ended March 31,   through
    2009   2008   March 31, 2009
     
Cash and cash equivalents, end of period
  $ 16,885     $ 17,974     $ 16,885  
     
Supplemental disclosure of non-cash investing and financing activities:
                       
Dividends on Series C Preferred Stock paid in preferred shares
  $     $     $ 1,811  
Accrued dividends on Preferred Stock
  $ 717     $ 589     $ 3,661  
Accretion of fair value of beneficial conversion on preferred stock
  $     $     $ 5,313  
Accretion of contingent beneficial conversion related on Series C Preferred Stock
  $     $     $ 839  
Induced conversion of preferred stock in connection with issuance of Series D Preferred Stock
  $     $     $ 2,796  
Issuance of Common Stock to pay debt
  $     $     $ 2,372  
Reverse acquisition — net liabilities assumed, excluding cash
  $     $     $ (214 )
Mandatory redeemable convertible preferred stock converted to Common Stock
  $     $     $ 500  
Common Stock issued to acquire intangible assets
  $     $     $ 24  
Stock options granted for services
  $     $     $ 1,424  
Deferred research and development cost resulting from Medtronic Stock Purchase
  $     $     $ 795  
Acquisition of equipment through capital leases
  $     $     $ 106  
See accompanying notes to condensed financial statements.

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NEUROLOGIX, INC. AND SUBSIDIARY
(A Development Stage Company)
Notes to Unaudited Condensed Financial Statements
(In thousands, except for share and per share amounts)
(1) Description of Business
     Neurologix, Inc. (“Neurologix” or the “Company”), is engaged in the research and development of proprietary treatments for disorders of the brain and central nervous system, primarily utilizing gene therapies. These treatments are designed as alternatives to conventional surgical and pharmacological treatments. The Company has not generated any operating revenues and, accordingly, it is a development stage company.
     The Company incurred net losses of $4,914, $1,848 and $39,216 and negative cash flows from operating activities of $1,959, $2,136 and $29,567 for the three months ended March 31, 2009 and 2008 and for the period from February 12, 1999 (inception) to March 31, 2009, respectively. The Company expects that it will continue to incur net losses and cash flow deficiencies from operating activities for the foreseeable future.
     The Company had cash and cash equivalents of $16,885 and $18,906 as of March 31, 2009 and December 31, 2008, respectively. Management believes that the Company’s current resources will enable it to continue as a going concern through at least June 30, 2010. The Company’s existing resources, however, are not sufficient to allow it perform all of the clinical trials required for drug approval and marketing. Accordingly, it will, from time to time, continue to seek additional funds through public or private equity offerings, debt financings or corporate collaboration and licensing arrangements. The Company does not know whether additional financing will be available when needed, or, if available, will be on acceptable or favorable terms to it or its stockholders.
(2) Basis of Presentation
     The accompanying unaudited condensed financial statements of the Company should be read in conjunction with the audited financial statements and notes thereto included in the Company’s Annual Report on Form 10-K for the year ended December 31, 2008 (the “2008 10-K”) filed with the Securities and Exchange Commission (the “SEC”) on March 25, 2009. The accompanying financial statements have been prepared in accordance with accounting principles generally accepted in the United States (“GAAP”) for interim financial information, the instructions to Form 10-Q and the rules and regulations of the SEC. Accordingly, since they are interim statements, the accompanying financial statements do not include all of the information and notes required by GAAP for annual financial statements, but reflect all adjustments consisting of normal, recurring adjustments, that are necessary for a fair presentation of the financial position, results of operations and cash flows for the interim periods presented. Interim results are not necessarily indicative of results for a full year. The December 31, 2008 consolidated balance sheet information was derived from the audited consolidated financial statements as of that date.

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(3) Summary of Significant Accounting Policies
     (a) Stock-Based Compensation:
     At March 31, 2009, the Company had one active share-based employee compensation plan available for employees, non-employee directors and consultant grants. Stock option awards granted from this plan are granted at the fair market value on the date of grant, and vest over a period determined at the time the options are granted, ranging from zero to three years, and generally have a maximum term of ten years. Certain options provide for accelerated vesting if there is a change in control (as defined in the plans) or if there is a termination of employment event for specified reasons set forth in certain employment agreements. When options are exercised, new shares of the Company’s common stock, par value $0.001 per share (the “Common Stock”), are issued.
     Effective January 1, 2006, the Company adopted SFAS No. 123R, “Share-based Payment” (“SFAS 123R”), for employee stock options and other share-based compensation using the modified prospective method. No share-based employee compensation cost had been reflected in net loss prior to the adoption of SFAS 123R.
     The total value of the stock option awards is expensed ratably over the service period of the employees receiving the awards. As of March 31, 2009, total unrecognized compensation cost related to stock option awards, to be recognized as expense subsequent to March 31, 2009, was approximately $94, and the related weighted-average period over which it is expected to be recognized was approximately 1 year.
     The amount of compensation expense recognized under SFAS 123R during the three months ended March 31, 2009 and 2008 was comprised of the following:
                 
    Three Months Ended March 31,
    2009   2008
     
Research and development
  $ 18     $ 37  
General and administrative
    55       82  
     
Share-based compensation expense
  $ 73     $ 119  
     
Net share-based compensation expenses per basic and diluted common share
  $ (0.00 )   $ (0.00 )
     

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     A summary of option activity as of March 31, 2009 and changes during the three months then ended is presented below:
                                 
                    Weighted-    
                    Average    
    Shares   Weighted- Average   Remaining   Aggregate
    Subject to Option   Exercise   Contractual   Intrinsic
Options   (000)   Price   Term (years)   Value
Outstanding at December 31, 2008
    3,623     $ 1.38       6.60          
Granted
                           
Exercised
                           
Forfeited or expired
    (8 )     0.62                  
 
                               
Outstanding at March 31, 2009
    3,615     $ 1.38       6.41     $ 0  
 
                               
Exercisable at March 31, 2009
    2,603     $ 1.59       5.91     $ 0  
     The fair value of the options is estimated under SFAS 123R on the date of grant using the Black-Scholes option valuation model. Expected volatility is based on historical volatility of the Common Stock. The risk-free rate is based on the five-year U.S. Treasury security rate.
     The expected option term represents the period that stock-based awards are expected to be outstanding based on the simplified method provided in Staff Accounting Bulletin No. 107 (“SAB 107”) which averages an award’s weighted-average vesting period and expected term for “plain vanilla” share options. Under SAB 107, options are considered to be “plain vanilla” if they have the following basic characteristics: granted “at-the-money”; exercisability is conditioned upon service through the vesting date; termination of service prior to vesting results in forfeiture; limited exercise period following termination of service; and options are non-transferable and non-hedgeable.
     In December 2007, the SEC issued Staff Accounting Bulletin No. 110 (“SAB 110”). SAB 110 was effective January 1, 2008 and expresses the views of the Staff of the SEC with respect to extending the use of the simplified method, as discussed in SAB 107, in developing an estimate of the expected term of “plain vanilla” share options in accordance with SFAS 123R. The Company will continue to use the simplified method until it has the historical data necessary to provide a reasonable estimate of expected life in accordance with SAB 107, as amended by SAB 110. For the expected term, the Company has “plain-vanilla” stock options, and therefore used a simple average of the vesting period and the contractual term for options granted subsequent to January 1, 2006 as permitted by SAB 107.
     There were no options granted during the three months ended March 31, 2009 or March 31, 2008.

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     For equity awards to non-employees, the Company also applies the Black-Scholes option valuation model to determine the fair value of such instruments in accordance with SFAS 123R and Emerging Issues Task Force Issue 96-18, “Accounting for Equity Instruments That Are Issued to Other Than Employees for Acquiring, or in Conjunction with Selling, Goods, or Services.” The options granted to non-employees are re-measured as they vest and the resulting value is recognized as an adjustment against our net loss over the period during which the services are received.
     (b) Basic and Diluted Net Loss Per Common Share:
     Basic net loss per common share excludes the effects of potentially dilutive securities and is computed by dividing net loss applicable to common stock by the weighted average number of common shares outstanding for the period. Diluted net income or loss per common share is adjusted for the effects of convertible securities, options, warrants and other potentially dilutive financial instruments only in the periods in which such effects would have been dilutive.
     The following outstanding securities were not included in the computation of diluted net loss per share because to do so would have had an anti-dilutive effect for the periods presented:
                 
    As of March 31,
    2009   2008
Stock options
    3,615,833       2,877,333  
Warrants
    7,441,920       6,364,334  
Common Stock issuable upon conversion of Series A Convertible Preferred Stock
    645       645  
Common Stock issuable upon conversion of Series C Convertible Preferred Stock
    7,060,856       6,477,020  
Common Stock issuable upon conversion of Series D Convertible Preferred Stock
    24,216,821       18,328,284  
     (c) Derivative Instruments:
     The Company accounts for derivatives in accordance with SFAS No. 133, “Accounting for Derivative Instruments and Hedging Activities” (“SFAS 133”), which provides accounting and reporting standards for derivative instruments, including certain derivative instruments embedded in other contracts. All derivatives are recorded on the Company’s statement of financial position at fair value in accordance with current accounting guidelines for such complex financial instruments. (See Note 4 and Note 5).

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     Effective January 1, 2009, the Company adopted Statement of Financial Accounting Standards No. 161, “Disclosures about Derivative Instruments and Hedging Activities—an amendment of FASB Statement No. 133” (“SFAS 161”). SFAS 161 requires entities that utilize derivative instruments to provide qualitative disclosures about their objectives and strategies for using such instruments, as well as any details of credit-risk-related contingent features contained within derivatives. SFAS 161 also requires entities to disclose additional information about the amounts and location of derivatives located within the financial statements, how the provisions of SFAS 133 have been applied, and the impact that hedges have on an entity’s financial position, financial performance, and cash flows. The Company’s derivative liabilities are related to warrants issued in connection with financing transactions and are therefore not designated as hedging instruments.
     (d) Financial Instruments and Fair Value:
     Effective January 1, 2008, the Company adopted SFAS No. 157, “Fair Value Measurements” (“SFAS 157”), for financial assets and liabilities. SFAS 157 establishes a fair value hierarchy that prioritizes the inputs to valuation techniques used to measure fair value. The hierarchy gives the highest priority to unadjusted quoted prices in active markets for identical assets or liabilities (Level 1 measurements) and the lowest priority to unobservable inputs (Level 3 measurements). The three levels of the fair value hierarchy under SFAS 157 are described below:
     Level 1 — Unadjusted quoted prices in active markets that are accessible at the measurement date for identical, unrestricted assets or liabilities;
     Level 2 — Quoted prices in markets that are not active or financial instruments for which all significant inputs are observable, either directly or indirectly; and
     Level 3 — Prices or valuations that require inputs that are both significant to the fair value measurement and unobservable.
     In estimating the fair value of the Company’s derivative liabilities, the Company used the probability-weighted Black-Scholes option pricing model. (See Note 4 and Note 5).
     (e) Recent Accounting Pronouncements:
     Effective January 1, 2009, the Company adopted FASB Staff Position No. FAS 157-2, “Partial Deferral of the Effective Date of Statement 157” (“FSP 157-2”). FSP 157-2 delayed the effective date of SFAS 157 for all nonfinancial assets and nonfinancial liabilities, except those that are recognized or disclosed at fair value in the financial statements on a recurring basis (at least annually) to fiscal years beginning after November 15, 2008. The adoption of FSP 157-2 did not have a material impact on the Company’s consolidated financial position, results of operations or cash flows.
(4) Derivative Financial Instruments
     Effective January 1, 2009, the Company adopted EITF Issue No. 07-05, “Determining Whether an Instrument (or Embedded Feature) Is Indexed to an Entity’s Own Stock” (“EITF 07-05”). EITF 07-05 clarifies the determination of whether an instrument issued by an entity (or an

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embedded feature in the instrument) is indexed to an entity’s own stock, which would qualify as a scope exception under SFAS 133.
     Based upon the Company’s analysis of the EITF 07-05 criteria, certain warrants (the “Warrants”) issued in connection with the issuance of the Series C Convertible Preferred Stock, par value $0.10 per share, and the Series D Convertible Preferred Stock, par value $0.10 per share, must now be treated as derivative liabilities in the Company’s statement of financial position. Prior to the adoption of EITF 07-05, the Company accounted for the Warrants as components of stockholders’ equity under SFAS 133.
     Consistent with EITF 07-05’s requirements, the Company recognized the cumulative effect of the change in accounting principle to reduce the opening balance of the deficit accumulated during the development stage for fiscal year 2009. The cumulative effect adjustment of $5,182 represents the difference between the amounts recognized in the statement financial position before initial application of EITF 07-05 on January 1, 2009. Additionally, the initial fair value of the Warrants, aggregating $6,252, which were initially recorded as additional paid-in capital upon issuance, was reclassified to long-term liabilities upon adoption of EITF 07-05. The amounts recognized at initial issuance were determined based on the estimated fair value of the Warrants using a probability-weighted Black-Scholes option pricing model. Prospectively, the Warrants will be re-measured at each balance sheet date based on estimated fair value, and any resultant changes in fair value will be recorded as non-cash valuation adjustments within other income (expense) in the Company’s statement of operations. During the three months ended March 31, 2009, the Company recorded other expense of $2,789 relating to the change in fair value of the Warrants during this period.
     The Company estimates the fair value of the Warrants using the probability-weighted Black-Scholes option pricing model. The assumptions used for the three months ended March 31, 2009 are noted in the following table:
         
    Three Months Ended
    March 31, 2009
Expected option term
    5 to 7 years  
Risk-free interest rate
    1.87% - 2.28%  
Expected volatility
    117%  
Dividend yield
    0%  
     Expected volatility is based on historical volatility of the Company’s common stock. The Warrants have a transferability provision and based on guidance provided in SAB 107 for options issued with such a provision, we used the full contractual term as the expected term of the Warrants. The risk free rate is based on the five-year and seven-year U.S. Treasury security rates.
(5) Fair Value Measurements
     The following table presents the Company’s liabilities that are measured and recognized at fair value on a recurring basis classified under the appropriate level of the fair value hierarchy as of March 31, 2009:

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    Quoted            
    Prices in            
    Active            
    Markets            
    for   Significant        
    Identical   Other   Significant    
    Assets and   Observable   Unobservable   Balance as
    Liabilities   Inputs   Inputs   of March
Description   (Level 1)   (Level 2)   (Level 3)   31, 2009
Derivative liabilities related to Warrants
  $     $     $ 3,859     $ 3,859  
     
     The following table sets forth a summary of changes in the fair value of the Company’s Level 3 liabilities for the three months ended March 31, 2009:
                                 
            Cumulative            
            Effect of the            
    Balance at   Adoption of           Balance as
    December   EITF 07-05   Unrealized   of March
Description   31, 2008   (See Note 4)   Losses   31, 2009
Derivative liabilities related to Warrants
  $     $ 1,070     $ 2,789     $ 3,859  
     
     The unrealized losses on the derivative liabilities are classified in other expenses as a change in derivative liabilities in the Company’s statement of operations. Fair value is determined based on a probability-weighted Black-Scholes option pricing model calculation. (See Note 4).
     A financial instrument’s level within the fair value hierarchy is based on the lowest level of any input that is significant to the fair value measurement. At each reporting period, the Company performs a detailed analysis of the assets and liabilities that are subject to SFAS 157. At each reporting period, all assets and liabilities for which the fair value measurement is based on significant unobservable inputs or instruments which trade infrequently and therefore have little or no price transparency are classified as Level 3.
(6) Commitments and Contingencies
     License Agreement:
     On January 13, 2009, the Company entered into a License Agreement (the “Cornell License Agreement”), with Cornell University (“Cornell”), whereby Cornell granted the Company an exclusive license for the worldwide use of certain patents for the development of products and methods for the treatment of psychiatric conditions. Under the terms of the Cornell License Agreement, the Company paid Cornell an initial fee, and, during the term of the Cornell License Agreement, will pay Cornell an annual license maintenance fee and certain milestone and royalty payments as provided for in the Cornell License Agreement. In addition, the Company agreed to continue providing

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research support to Cornell under the Clinical Study Agreement during the term of the Cornell License Agreement.
Item 2. Management’s Discussion and Analysis of Financial Condition and Results of Operations
     The following discussion should be read in conjunction with the unaudited financial statements and accompanying notes in this quarterly report on Form 10-Q and the audited financial statements and notes thereto as of and for the year ended December 31, 2008 included in the 2008 10-K. Operating results are not necessarily indicative of results that may occur in future periods. All amounts in this Item 2 are in thousands.
Business Overview
     The Company is a development stage company that is engaged in the research and development of proprietary treatments for disorders of the brain and central nervous system using gene transfer and other innovative therapies. These treatments are designed as alternatives to conventional surgical and pharmacological treatments.
     To date, the Company has not generated any operating revenues and has incurred annual net losses. From inception through March 31, 2009, the Company had an accumulated deficit of $42,982, and it expects to incur additional losses for the foreseeable future. The Company recognized net losses of $4,914 for the three months ended March 31, 2009, and $1,848 for the three months ended March 31, 2008.
     Since its inception, the Company has financed its operations primarily through sales of its equity and debt securities. From inception through March 31, 2009, the Company received proceeds primarily from private sales of equity and debt securities and from its merger in February 2004 of approximately $44,531 in the aggregate.
     The Company has devoted a significant portion of its capital resources to the research and development of its products. The Company’s primary efforts are directed to the development of a therapeutic product to meet the needs of patients suffering from Parkinson’s disease.
     In addition to its product for Parkinson’s disease, the Company is undertaking efforts to develop products for the treatment of Huntington’s disease and temporal lobe epilepsy (“TLE”). The Company believes that its current resources are sufficient to conduct a clinical trial for its Huntington’s disease product. Such trial would be conducted in a foreign location and would involve human patients who will receive a brain infusion of the Company’s gene-based treatment for the disease. The timing of such trial is subject to the availability of the adeno-associated virus (“AAV”) vector and an infusion system, and to the receipt of applicable regulatory approvals. The Company does not anticipate using its current funds for the further development of its TLE product at this time. See “Plan of Operation — Epilepsy” and “Plan of Operation — Huntington’s disease” below.

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Plan of Operation
     Parkinson’s Disease
     In October 2006, the Company announced that it had completed its Phase 1 clinical trial for Parkinson’s disease. The results of this trial indicate that the treatment appears to be safe and well-tolerated in trial participants with advanced Parkinson’s disease, with no evidence of adverse effects or immunologic reaction related to the study treatment. The trial, in which treatment was confined to only one side of the brain, also yielded statistically significant clinical efficacy and neuroimaging results. The results were peer-reviewed and published in the June 23, 2007 issue of the journal The Lancet and the online edition of the Proceedings of the National Academy of Sciences in November 2007.
     In December 2008, the Company initiated a Phase 2 clinical trial for Parkinson’s disease. This trial is a randomized, controlled study designed to further establish the effectiveness and the safety of the treatment. The trail is being conducted in multiple medical centers throughout the U.S. with an expected 40 trial participants, 20 of which will be randomly selected to receive the treatment and 20 of which will be randomly selected to receive a sterile saline solution. The Company expects to conclude the surgeries for its Phase 2 clinical trial in the second half of 2009 and announce initial efficacy data in the first half of 2010.
     The Company will take steps to move toward a pivotal trial for treatment of Parkinson’s disease, and hopes to be in a position to file its protocol with the U.S. Food and Drug Administration (“FDA”) in 2010 or 2011. The Company’s conduct of such trial will require, among other things, approval by the FDA. Currently, the Company estimates that the pivotal trial could be completed in 2013 and the estimated total costs to reach that milestone are expected to be in excess of $20,000.
     Huntington’s disease
     In November 2005, the Company announced findings from pre-clinical studies which showed that a form of the gene XIAP (X-linked Inhibitor of Apoptosis Protein or “dXIAP”) may prevent the progression of Huntington’s disease. The Company further investigated the neuroprotective effects of dXIAP by injecting presymptomatic rodents with AAV vectors encoding dXIAP into the striatum, an area of the brain normally affected in Huntington’s patients. In the study, rodents injected with this vector experienced significant reversal of motor dysfunction to the level of normal rodents, while there was no improvement in rodents treated with a control vector. dXIAP also appeared to prolong the lifespan of the rodents. Furthermore, no adverse effects due to dXIAP overproduction were observed.
     In August 2008, the Company entered into a license agreement with respect to an exclusive license for the worldwide rights, excluding China, for the use of dXIAP for therapeutic or prophylactic purposes in the treatment of Huntington’s disease.
     The Company’s development of this therapy for Huntington’s disease is currently in the pre-clinical phase. The Company is planning to conduct a clinical trial for this therapy, the timing of which is subject to the availability of the AAV vector and an infusion system, and to the receipt of applicable regulatory approvals. Such trial would be conducted in a foreign

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location and would involve human patients who will receive a brain infusion of the Company’s gene-based treatment for this disease.
     Epilepsy
     In December 2006, the Company submitted an investigational new drug application to the FDA for permission to begin a Phase 1 clinical trial in TLE. The proposed clinical protocol for this study was presented to the National Institute of Health’s Office of Biotechnology Activities Recombinant DNA Advisory Committee on September 23, 2004 and reviewed favorably.
     During the second quarter of 2008, the Company learned that further action is required to protect adequately the Company’s intellectual property rights in its technology relating to its TLE product. The Company recently discovered that certain individuals, not affiliated with the Company, may also have rights to use certain technology currently used by the Company with respect to the TLE product. If the Company elects to proceed with its Phase 1 clinical trial for its TLE product, the Company will need to conduct an additional pre-clinical study in non-human primates, which would be conducted in accordance with guidance received from the FDA.
     Based on the foregoing, the commencement of a Phase 1 clinical trial for the Company’s TLE product will be subject, among other things, to the successful resolution of the above mentioned intellectual property issues, to the successful completion of an additional pre-clinical study, the availability of funding, concurrence by the FDA and procurement of related intellectual property licenses.
     Other Therapies
     The Company will also continue its efforts in developing therapies to treat other neurodegenerative and metabolic disorders, including depression and genetically-based obesity under its research agreements with Cornell University for its Medical College and Ohio State University.
     Future Operating Expenditures
     Over the next 12 months, in addition to its normal recurring expenditures, the Company expects to spend approximately $6,000 in Phase 2 clinical trial expenses with regard to its Parkinson’s treatment; $1,000 in costs associated with operating as a publicly traded company, such as legal fees, accounting fees, insurance fees, insurance premiums, investor and public relations fees; $600 in clinical trial expenses with regard to its Huntington’s disease product; $700 in research and licensing fees; and $200 in costs associated with scaling up its manufacturing capabilities for the supply of product for a Parkinson’s pivotal trial.
Results of Operations
Three Months Ended March 31, 2009 Compared to the Three Months Ended March 31, 2008
     Revenues. The Company did not generate any operating revenues in the three months ended March 31, 2009 or in the three months ended March 31, 2008.

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     Costs and Expenses.
     Research and Development. Research and development expenses increased by $327 during the three months ended March 31, 2009 to $1,409 as compared to $1,082 during the comparable period in 2008. The increase is mainly due to a $236 increase in fees related to license agreements and sponsored research agreements, as well as a $102 increase in process development expenses for large scale manufacturing of the Company’s products and infusion devices and a $50 increase in non-cash compensation to scientific consultants. This increase was offset by decreases, from the prior comparable period, of $42 in clinical trial expenses associated with the Company’s Parkinson’s disease product and $32 in employee compensation expenses.
     General and Administrative. General and administrative expenses decreased by $173 to $749 during the three months ended March 31, 2009, as compared to $922 during the comparable period in 2008. This decrease was due, in part, to a $62 reduction in professional fees, including legal fees, accounting fees, investor and public relations fees and recruiting fees, a $51 decrease in employee compensation expenses, and a $29 reduction in patent impairment charges.
     Other Income (Expense), Net. The Company had net other expenses of $2,756 during the three months ended March 31, 2009, as compared to net other income of $156 during the comparable period in 2008. The change is mainly due to a $2,789 charge incurred for the increase in estimated fair value of its derivative liabilities during the three months ended March 31, 2009. Additionally, the Company earned $123 less in interest income during the three months ended March 31, 2009 as compared to the comparable period in 2008.
Liquidity and Capital Resources
     Cash and cash equivalents were $16,885 at March 31, 2009.
     The Company is a development stage company and has not generated any operating revenues as of March 31, 2009. In addition, the Company will continue to incur net losses and cash flow deficiencies from operating activities for the foreseeable future.
     Based on its cash flow projections, the Company believes that its current resources will enable it to continue as a going concern through at least June 30, 2010. The Company’s existing resources are not sufficient to allow it to perform all of the clinical trials required for drug approval and marketing, including a pivotal trial for Parkinson’s disease. Accordingly, it will continue to seek additional funds through public or private equity offerings, debt financings or corporate collaboration and licensing arrangements. The Company does not know whether additional financing will be available when needed or, if available, will be on acceptable or favorable terms to it or its stockholders.
     Net cash used in operating activities was $1,959 for the three months ended March 31, 2009 as compared to $2,136 during the comparable period in 2008. The $177 decrease in net cash used in operations was due to a $480 decrease in cash used as a result of changes to working capital in 2009, offset by a $154 increase in operating expenses and a $123 decrease in interest income for the three months ended March 31, 2009.

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     The Company had net cash used in investing activities of $62 during the three months ended March 31, 2009 as compared to $47 during the three months ended March 31, 2008. Cash used in investing activities relates to purchases of equipment and additions to intangible assets made by the Company during 2009 and 2008.
     The Company had no net cash used in or provided by financing activities during the three months ended March 31, 2009 and 2008.
FORWARD-LOOKING STATEMENTS
     This document includes certain statements of the Company that may constitute “forward-looking statements” within the meaning of Section 27A of the Securities Act of 1933, as amended, and Section 21E of the Securities Exchange Act of 1934, as amended (the “Exchange Act”) and which are made pursuant to the Private Securities Litigation Reform Act of 1995. These forward-looking statements and other information relating to the Company are based upon the beliefs of management and assumptions made by and information currently available to the Company. Forward-looking statements include statements concerning plans, objectives, goals, strategies, future events, or performance, as well as underlying assumptions and statements that are other than statements of historical fact. When used in this document, the words “expects,” “anticipates,” “estimates,” “plans,” “intends,” “projects,” “predicts,” “believes,” “may,” “should,” “potential,” “continue” and similar expressions, are intended to identify forward-looking statements. These statements reflect the current view of the Company’s management with respect to future events and are subject to numerous risks, uncertainties, and assumptions. Many factors could cause the actual results, performance or achievements of the Company to be materially different from any future results, performance, or achievements that may be expressed or implied by such forward-looking statements, including, among other things:
    the inability of the Company to raise additional funds, when needed, through public or private equity offerings, debt financings or additional corporate collaboration and licensing arrangements; and
 
    the inability of the Company to successfully commence and complete all necessary clinical trials for the commercialization of its product to treat Parkinson’s disease.
     Other factors and assumptions not identified above could also cause the actual results to differ materially from those set forth in the forward-looking statements. Additional information regarding factors which could cause results to differ materially from management’s expectations is found in the section entitled “Risk Factors” contained in the 2008 10-K. Although the Company believes these assumptions are reasonable, no assurance can be given that they will prove correct. Accordingly, you should not rely upon forward-looking statements as a prediction of actual results. Further, the Company undertakes no obligation to update forward-looking statements after the date they are made or to conform the statements to actual results or changes in the Company’s expectations.

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Item 3. Quantitative and Qualitative Disclosures About Market Risk
Not applicable.
Item 4. Controls and Procedures
          (a) Disclosure Controls and Procedures. The Company maintains disclosure controls and procedures as required under Rule 13a-15(e) and Rule 15d-15(e) promulgated under the Exchange Act, that are designed to ensure that information required to be disclosed in the Company’s Exchange Act reports is recorded, processed, summarized and reported within the time periods specified in the SEC’s rules and forms, and that such information is accumulated and communicated to the Company’s management, including its Chief Executive Officer and Chief Financial Officer, as appropriate, to allow timely decisions regarding required disclosure.
     As of March 31, 2009, the Company’s management carried out an evaluation, under the supervision and with the participation of the Company’s Chief Executive Officer and Chief Financial Officer, of the effectiveness of its disclosure controls and procedures. Based on the foregoing, its Chief Executive Officer and Chief Financial Officer concluded that the Company’s disclosure controls and procedures were effective as of March 31, 2009.
          (b) Changes in Internal Control Over Financial Reporting. There were no changes in the Company’s internal control over financial reporting that occurred during the period covered by this report that have materially affected, or are reasonably likely to materially affect, the Company’s internal control over financial reporting.
PART II. OTHER INFORMATION
Item 6. Exhibits
     See Exhibit Index.

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Signatures
     Pursuant to the requirements of the Securities Exchange Act of 1934, the Company has duly caused this report to be signed on its behalf by the undersigned, thereunto duly authorized.
         
  NEUROLOGIX, INC.
 
 
May 11, 2009  /s/ John E. Mordock    
  John E. Mordock   
  President and Chief Executive Officer
(as Principal Executive Officer) 
 
 
     
May 11, 2009  /s/ Marc L. Panoff    
  Marc L. Panoff   
  Chief Financial Officer, Secretary and Treasurer
(as Principal Accounting Officer/Principal Financial Officer) 
 

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EXHIBIT INDEX
     
Exhibit No.   Exhibit
 
   
31.1
  Rule 13a-14(a)/15d-14(a) Certification of President and Chief Executive Officer (as Principal Executive Officer).**
 
   
31.2
  Rule 13a-14(a)/15d-14(a) Certification of Chief Financial Officer, Secretary and Treasurer (as Principal Accounting Officer/Principal Financial Officer).**
 
   
32.1
  Section 1350 Certification of Chief Executive Officer and Chief Financial Officer, Secretary and Treasurer.**
 
**   Filed herewith

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